I've had the same problem with my 98 Civic Hatch for several years.
Interesting enough, I haven't noticed any squeaking for the last several
month. It most have gone away on it's own, or the weather is too warm.

Pars
98 DX Hatch

Blair wrote:
>
> Hi, a squeaking sound from pressing the clutch is becoming more apparent
> lately. I have a 98 Civic Si (CDN). It seems like when the car is cold,
> the sound is really aubible. After say 30-60 min of driving there is zero
> to little noise. The sound is definitely coming from the clutch area around
> the rubber boot. I put a fair amount of grease on the shaft within the boot
> but it hasn't done much. Is there anything I can do? Thank you.